Making Data Pipelines in R: A Story From A “Self-Taught” Perspective
summary
Built a working R pipeline for a local health department that ingests messy opioid datasets (including a Narcan field coerced as “4 plus”), automates cleaning, validation, and HTML report rendering, and documents flow on GitHub (https://github.com/Meghansaha/pipelines_in_R). Uses modular scripts and a docking script to orchestrate sourcing and conditional processing, adopts project-aware file structures with the here pattern, adds assertions via pointblank, and publishes a readable data workflow map to make maintenance and handoff feasible.
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chapters (7)
- 0:00Data pipelines in R
- 1:51First encounters
- 6:30Environmental structures
- 10:52Internal environments
- 14:10Data validations
- 16:43Pipeline sustainability
- 19:13Recap and key takeaways
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