Biological Knowledge Base: Projectional Editor in the cloud
summary
A cloud-hosted Biological Knowledge Base is built on Genestack plus a Web-MPS projectional editor that runs DSLs (called BDD language) and supports live operational transformation collaborative editing; completion and heavy lookups run on a separate editor service to avoid downloading multi‑GB ontologies. The stack uses Kotlin multiplatform code, AWS Docker deployment and TeamCity CI, imports NCBI/UniProt/Reactome, offers user‑defined custom editors, server‑side model queries and scoped completions, and demos show interactive editing and remote completions working end‑to‑end.
AI-written summary · about
chapters (6)
- 0:00Biological Knowledge Base intro
- 10:12Live demo of editor
- 25:01B2B language in Kotlin DSL
- 42:56Projectional editing architecture
- 51:03Kotlin multiplatform deployment
- 55:45Q&A on WebMPS & Kotlin
related talks
34mBuilding Web-based Modeling Tools based on Eclipse Theia
23mGenAI-Driven Knowledge Bases: Optimizing AWS Support and Cloud Ops
37mScience in the Browser
30mIntroducing the Open Source Semantic Graph Editor of Deutsche Bahn
31mLamRAG: From Data to Constructive Insights using Amazon Bedrock
32mBuilding cloud-native (modeling) tools
07mCloud architecture for population-scale analyses of genomes and AI.
31mReliability and Resilience in the Cloud
