Keynote: Accelerating Genome Sequencing via Containers and Kubernetes
summary
X-Turing builds a production genome pipeline stack on Kubernetes that replaces fragile HPC/VM setups, running 5000+ containerized apps and thousands of instances for customers like BGI and China National GeneBank. The platform combines a private cloud, shared storage, a Big Data backbone with Spark, and a workflow engine to handle many tiny heterogeneous tools, enable reproducible pipelines moved from PC to cluster, and simplify bursting and orchestration as a practical full-stack toolchain on Kubernetes.
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chapters (10)
- 0:00Start
- 2:05Background
- 2:42DNA is the Code of Life
- 5:50IT Challenge Resilient Demands vs Complex Workflow
- 7:11IT Challenge Fragmented Toolset
- 7:29GenoStack Overview
- 8:42Pipeline Based on Container
- 10:48K8s in the Future Container and Big Data?
- 13:55X-Turing Gene Sequencing Services Enabled by High Performance Container Services
- 16:07KubeGene Project
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