Ben Raphael
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| title | conference | date |
|---|---|---|
| Network Analysis of Cancer Mutations | Network Biology 2016 | 2016-04-11 |
Presents an algorithmic fix to HotNet that uses asymmetric heat diffusion / lazy random-walk propagation on interaction graphs, followed by thresholding and… | ||
| Introduction to Cancer Bioinformatics I: Inferring Genomic Variation from Tumor Sequencing Data | Algorithmic Challenges in Genomics Boot Camp | 2016-01-19 |
Course argues cancer sequencing needs beta‑binomial overdispersion models to avoid thousands of false SNV calls, shows ultra‑deep control detecting variants… | ||
| Introduction to Cancer Bioinformatics II: Tumor Phylogeny | Algorithmic Challenges in Genomics Boot Camp | 2016-01-19 |
Describes reconstructing tumor trees under the infinite sites assumption using perfect phylogeny, factoring sample variant allele frequencies (VAFs) via U×B… | ||
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